Chen YY, Evavold CL, Mann M, Davenport ER, McFall-Ngai M, Bienko M, Ueda HR, Tian L, Tjahjono N, Anikeeva P, Liu JG, Deans TL, Shen X (2024) What tool or method do you wish existed? Cell 187((17)):4433-4438 · Pubmed · DOI
Gestal MC, Oates AE, Akob DM, Criss AK, , (2024) Perspectives on the future of host-microbe biology from the Council on Microbial Sciences of the American Society for Microbiology. mSphere 9((7)):e0025624 PMC8060789 · Pubmed · DOI
Bosch TCG, Wigley M, Colomina B, Bohannan B, Meggers F, Amato KR, Azad MB, Blaser MJ, Brown K, Dominguez-Bello MG, Ehrlich SD, Elinav E, Finlay BB, Geddie K, Geva-Zatorsky N, Giles-Vernick T, Gros P, Guillemin K, Haraoui LP, Johnson E, Keck F, Lorimer J, McFall-Ngai MJ, Nichter M, Pettersson S, Poinar H, Rees T, Tropini C, Undurraga EA, Zhao L, Melby MK (2024) The potential importance of the built-environment microbiome and its impact on human health. Proceedings of the National Academy of Sciences of the United States of America 121((20)):e2313971121 PMC7474686 · Pubmed · DOI
Yang L, Lawhorn S, Bongrand C, Kosmopoulos JC, Kuwabara J, VanNieuwenhze M, Mandel MJ, McFall-Ngai M, Ruby E (2024) Bacterial growth dynamics in a rhythmic symbiosis. Molecular biology of the cell 35((6)):ar79 PMC6794480 · Pubmed · DOI
McFall-Ngai M (2024) Symbiosis takes a front and center role in biology. PLoS biology 22((4)):e3002571 PMC6428750 · Pubmed · DOI
Bosch TCG, Blaser MJ, Ruby E, McFall-Ngai M (2024) A new lexicon in the age of microbiome research. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 379((1901)):20230060 PMC8724541 · Pubmed · DOI
Ling F, Essock-Burns T, McFall-Ngai M, Katija K, Nawroth JC, Kanso E (2024) Flow Physics Explains Morphological Diversity of Ciliated Organs. bioRxiv : the preprint server for biology : PMC10760039 · Pubmed · DOI
Tropini C, Finlay BB, Nichter M, Melby MK, Metcalf JL, Dominguez-Bello MG, Zhao L, McFall-Ngai MJ, Geva-Zatorsky N, Amato KR, Undurraga EA, Poinar HN, Gilbert JA (2023) Time to rethink academic publishing: the peer reviewer crisis. mBio 14((6)):e0109123 PMC8765409 · Pubmed · DOI
Mannochio-Russo H, Swift SOI, Nakayama KK, Wall CB, Gentry EC, Panitchpakdi M, Caraballo-Rodriguez AM, Aron AT, Petras D, Dorrestein K, Dorrestein TK, Williams TM, Nalley EM, Altman-Kurosaki NT, Martinelli M, Kuwabara JY, Darcy JL, Bolzani VS, Wegley Kelly L, Mora C, Yew JY, Amend AS, McFall-Ngai M, Hynson NA, Dorrestein PC, Nelson CE (2023) Microbiomes and metabolomes of dominant coral reef primary producers illustrate a potential role for immunolipids in marine symbioses. Communications biology 6((1)):896 PMC5096306 · Pubmed · DOI
Rouressol L, Briseno J, Vijayan N, Chen GY, Ritschard EA, Sanchez G, Nyholm SV, McFall-Ngai MJ, Simakov O (2023) Emergence of novel genomic regulatory regions associated with light-organ development in the bobtail squid. iScience 26((7)):107091 PMC6324079 · Pubmed · DOI
Essock-Burns T, Lawhorn S, Wu L, McClosky S, Moriano-Gutierrez S, Ruby EG, McFall-Ngai MJ (2023) Maturation state of colonization sites promotes symbiotic resiliency in the Euprymna scolopes-Vibrio fischeri partnership. Microbiome 11((1)):68 PMC9185944 · Pubmed · DOI
Yue X, Zhang S, Wang H, Yu J, Peng Q, McFall-Ngai M, Liu B (2022) The mud-dwelling clam secretes endogenously synthesized erythromycin. Proceedings of the National Academy of Sciences of the United States of America 119((49)):e2214150119 PMC4409153 · Pubmed · DOI
Gundlach KA, Nawroth J, Kanso E, Nasrin F, Ruby EG, McFall-Ngai M (2022) Ciliated epithelia are key elements in the recruitment of bacterial partners in the squid-vibrio symbiosis. Frontiers in cell and developmental biology 10:974213 PMC2978254 · Pubmed · DOI
Olaso CM, Viliunas J, McFall-Ngai M (2022) A peptidoglycan-recognition protein orchestrates the first steps of symbiont recruitment in the squid-vibrio symbiosis. Symbiosis (Philadelphia, Pa.) 87((1)):31-43 PMC17651 · Pubmed · DOI
Amend AS, Swift SOI, Darcy JL, Belcaid M, Nelson CE, Buchanan J, Cetraro N, Fraiola KMS, Frank K, Kajihara K, McDermot TG, McFall-Ngai M, Medeiros M, Mora C, Nakayama KK, Nguyen NH, Rollins RL, Sadowski P, Sparagon W, Téfit MA, Yew JY, Yogi D, Hynson NA (2022) A ridge-to-reef ecosystem microbial census reveals environmental reservoirs for animal and plant microbiomes. Proceedings of the National Academy of Sciences of the United States of America 119((33)):e2204146119 PMC6235622 · Pubmed · DOI
Truong TV, Holland DB, Madaan S, Andreev A, Keomanee-Dizon K, Troll JV, Koo DES, McFall-Ngai MJ, Fraser SE (2022) Publisher Correction: Author Correction: High-contrast, synchronous volumetric imaging with selective volume illumination microscopy. Communications biology 5((1)):533 PMC9142577 · Pubmed · DOI
Truong TV, Holland DB, Madaan S, Andreev A, Keomanee-Dizon K, Troll JV, Koo DES, McFall-Ngai MJ, Fraser SE (2022) Author Correction: High-contrast, synchronous volumetric imaging with selective volume illumination microscopy. Communications biology 5((1)):363 PMC9001636 · Pubmed · DOI
Lynch JB, James N, McFall-Ngai M, Ruby EG, Shin S, Takagi D (2022) Transitioning to confined spaces impacts bacterial swimming and escape response. Biophysical journal 121((13)):2653-2662 PMC4577176 · Pubmed · DOI
Nyholm SV, McFall-Ngai MJ (2022) Publisher Correction: A lasting symbiosis: how the Hawaiian bobtail squid finds and keeps its bioluminescent bacterial partner. Nature reviews. Microbiology 20((5)):315 · Pubmed · DOI
Bongrand C, Koch E, Mende D, Romano A, Lawhorn S, McFall-Ngai M, DeLong EF, Ruby EG (2022) Evidence of Genomic Diversification in a Natural Symbiotic Population Within Its Host. Frontiers in microbiology 13:854355 PMC3992678 · Pubmed · DOI
McFall-Ngai M (2022) Building a career during a revolution in biology. Nature microbiology 7((3)):347-348 · Pubmed · DOI
McFall-Ngai M, Ruby E (2021) Getting the Message Out: the Many Modes of Host-Symbiont Communication during Early-Stage Establishment of the Squid-Vibrio Partnership. mSystems 6((5)):e0086721 PMC8547416 · Pubmed · DOI
Essock-Burns T, Bennett BD, Arencibia D, Moriano-Gutierrez S, Medeiros M, McFall-Ngai MJ, Ruby EG (2021) Bacterial Quorum-Sensing Regulation Induces Morphological Change in a Key Host Tissue during the Euprymna scolopes-Vibrio fischeri Symbiosis. mBio 12((5)):e0240221 PMC8546586 · Pubmed · DOI
McFall-Ngai M (2021) Keeping the clock running: The microbiome as a pivotal timekeeper. Cell metabolism 33((8)):1514-1515 · Pubmed · DOI
Nyholm SV, McFall-Ngai MJ (2021) A lasting symbiosis: how the Hawaiian bobtail squid finds and keeps its bioluminescent bacterial partner. Nature reviews. Microbiology 19((10)):666-679 PMC8440403 · Pubmed · DOI
Moriano-Gutierrez S, Ruby EG, McFall-Ngai MJ (2021) MicroRNA-Mediated Regulation of Initial Host Responses in a Symbiotic Organ. mSystems 6((3)): PMC8125070 · Pubmed · DOI
Bosch TCG, McFall-Ngai M (2021) Animal development in the microbial world: Re-thinking the conceptual framework. Current topics in developmental biology 141:399-427 PMC8214508 · Pubmed · DOI
McFall-Ngai M, Bosch TCG (2021) Animal development in the microbial world: The power of experimental model systems. Current topics in developmental biology 141:371-397 PMC8211120 · Pubmed · DOI
Finlay BB, Amato KR, Azad M, Blaser MJ, Bosch TCG, Chu H, Dominguez-Bello MG, Ehrlich SD, Elinav E, Geva-Zatorsky N, Gros P, Guillemin K, Keck F, Korem T, McFall-Ngai MJ, Melby MK, Nichter M, Pettersson S, Poinar H, Rees T, Tropini C, Zhao L, Giles-Vernick T (2021) The hygiene hypothesis, the COVID pandemic, and consequences for the human microbiome. Proceedings of the National Academy of Sciences of the United States of America 118((6)): PMC8017729 · Pubmed · DOI
Alivisatos AP, Blaser MJ, Brodie EL, Chun M, Dangl JL, Donohue TJ, Dorrestein PC, Gilbert JA, Green JL, Jansson JK, Knight R, Maxon ME, McFall-Ngai MJ, Miller JF, Pollard KS, Ruby EG, Taha SA, (2015) MICROBIOME. A unified initiative to harness Earth's microbiomes. Science (New York, N.Y.) 350((6260)):507-8 · Pubmed · DOI